rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N1037_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N1037_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/N1037_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N1037_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N1037_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/N1037_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N1141_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N1141_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/N1141_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N1141_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N1141_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/N1141_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N1177_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N1177_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/N1177_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N1177_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N1177_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/N1177_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N1281_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N1281_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/N1281_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N1281_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N1281_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/N1281_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N1320_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N1320_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/N1320_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N1320_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N1320_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/N1320_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N2044_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N2044_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/N2044_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N2044_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N2044_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/N2044_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N2356_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N2356_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/N2356_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N2356_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N2356_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/N2356_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N2598_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N2598_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/N2598_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N2598_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N2598_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/N2598_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N2663_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N2663_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/N2663_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N2663_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N2663_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/N2663_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N2701_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N2701_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/N2701_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N2701_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N2701_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/N2701_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N512_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N512_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/N512_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N512_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N512_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/N512_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N685_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N685_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/N685_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N685_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N685_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/N685_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N691_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N691_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/N691_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N691_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N691_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/N691_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N697_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N697_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/N697_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N697_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N697_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/N697_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N733_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N733_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/N733_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N733_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N733_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/N733_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N740_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N740_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/N740_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N740_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N740_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/N740_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N891_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N891_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/N891_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N891_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N891_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/N891_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N915_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N915_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/N915_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N915_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N915_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/N915_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N949_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N949_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/N949_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N949_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N949_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/N949_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N989_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N989_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/N989_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N989_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N989_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/N989_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N996_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N996_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/N996_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N996_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/N996_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/N996_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T1037_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T1037_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/T1037_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T1037_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T1037_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/T1037_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T1141_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T1141_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/T1141_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T1141_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T1141_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/T1141_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T1177_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T1177_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/T1177_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T1177_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T1177_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/T1177_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T1281_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T1281_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/T1281_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T1281_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T1281_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/T1281_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T1320_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T1320_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/T1320_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T1320_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T1320_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/T1320_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T2044_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T2044_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/T2044_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T2044_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T2044_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/T2044_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T2356_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T2356_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/T2356_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T2356_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T2356_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/T2356_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T2598_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T2598_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/T2598_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T2598_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T2598_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/T2598_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T2663_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T2663_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/T2663_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T2663_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T2663_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/T2663_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T2701_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T2701_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/T2701_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T2701_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T2701_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/T2701_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T512_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T512_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/T512_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T512_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T512_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/T512_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T685_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T685_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/T685_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T685_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T685_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/T685_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T691_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T691_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/T691_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T691_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T691_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/T691_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T697_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T697_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/T697_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T697_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T697_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/T697_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T733_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T733_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/T733_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T733_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T733_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/T733_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T740_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T740_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/T740_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T740_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T740_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/T740_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T891_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T891_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/T891_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T891_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T891_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/T891_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T915_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T915_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/T915_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T915_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T915_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/T915_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T949_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T949_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/T949_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T949_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T949_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/T949_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T989_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T989_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/T989_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T989_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T989_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/T989_star_pc
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T996_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T996_2.clean.fq.gz lncRNA/lncRNA_RSEM_index/lncRNA.final.v2.RSEM.star RSEM/T996_star_lncRNA
rsem-calculate-expression --paired-end --no-bam-output -p 4 --forward-prob 0 --star --gzipped-read-file /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T996_1.clean.fq.gz /disk/zhaoqi/CRC_with_without_metastasis_LateStage_RNA_seq_wuqinian/T996_2.clean.fq.gz lncRNA/pc_RSEM_index/protein_coding.final.RSEM.star RSEM/T996_star_pc
